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Popular repositories

  1. TOGA TOGA Public

    TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…

    Python 132 21

  2. GenomeAlignmentTools GenomeAlignmentTools Public

    Tools for improving the sensitivity and specificity of genome alignments

    C 55 15

  3. make_lastz_chains make_lastz_chains Public

    Portable solution to generate genome alignment chains using lastz

    Python 36 8

  4. CESAR2.0 CESAR2.0 Public

    C 26 10

  5. GeneLossPipe GeneLossPipe Public

    Perl 22 7

  6. ForwardGenomics ForwardGenomics Public

    Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

    Perl 20 9

Repositories

Showing 10 of 11 repositories
  • TOGA Public

    TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

    Python 132 MIT 21 12 1 Updated Apr 25, 2024
  • make_lastz_chains Public

    Portable solution to generate genome alignment chains using lastz

    Python 36 MIT 8 23 1 Updated Feb 18, 2024
  • GenomeAlignmentTools Public

    Tools for improving the sensitivity and specificity of genome alignments

    C 55 MIT 15 13 0 Updated Jan 17, 2024
  • REforge Public

    Regulatory Element Forward Genomics to associate transcription factor binding site divergence in regulatory elements with phenotypic differences between species

    Python 8 MIT 3 4 1 Updated Feb 5, 2023
  • IterativeErrorCorrection Public

    Iterative error correction of long reads

    Python 11 MIT 3 4 1 Updated Dec 9, 2022
  • CESAR2.0 Public
    C 26 MIT 10 6 0 Updated Dec 1, 2022
  • GeneLossPipe Public
    Perl 22 MIT 7 2 0 Updated Nov 29, 2022
  • TFforge Public

    Identifying transcription factors involved in phenotypic differences between species

    Python 0 MIT 3 0 1 Updated Nov 29, 2022
  • ForwardGenomics Public

    Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

    Perl 20 MIT 9 7 0 Updated Nov 29, 2022
  • Parasol_LSF_Slurm Public

    A parasol-like wrapper around LSF or Slurm for efficiently handling batches of jobs on a compute cluster

    Perl 2 MIT 2 4 0 Updated Jan 14, 2021
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