Skip to content

Issues: oushujun/EDTA

How to run EDTA in large genomes (>10Gb)?
#61 by benedictcoombes was closed Apr 19, 2021
Closed 20
TEanno.sum generation
#169 by wyim-pgl was closed Apr 2, 2021
Closed 1
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

53 Open 397 Closed
53 Open 397 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

panEDTA timing out on large genomes
#463 opened May 9, 2024 by joannarifkin
1
TE_XXX in gff3 from panEDTA
#462 opened May 9, 2024 by CongLiu37
Unusual Output and Failure During Regular Annotation
#461 opened May 6, 2024 by sjteresi
solve '*.mod.EDTA.TEanno.sum' empty
#460 opened May 5, 2024 by ZJin2021
Statistical genome size
#459 opened May 1, 2024 by ltswx
'调用失败'
#458 opened Apr 29, 2024 by Xxi-GitHub
8
ERROR: TE annotation stats results not found in B.purpurea.fasta.mod.EDTA.TE.fa.stat!
#457 opened Apr 24, 2024 by Qikiiso
1
LINE and SINE results files has 0 bp!
#456 opened Apr 17, 2024 by XuanZhang-Black
[No LINE, EDTA 2.2.0] Empty LINE file after RM2
#455 opened Apr 17, 2024 by Isoris
PanEDTA test output
#454 opened Apr 16, 2024 by AnaKurdadze
文件缺失
#452 opened Mar 22, 2024 by Blosers
1
I just found that this script in the (../../share/RepeatMasker/) folder will not have this error, maybe can copy the input file, I think it can try?If you tried, can you tell me the result?
#450 opened Mar 21, 2024 by chenHuiRu8
3
Hey!Have you solved your problem? I had the same problem.
#449 opened Mar 21, 2024 by chenHuiRu8
1
dependencies not found in singularity install
#446 opened Mar 12, 2024 by molikd
4
Combining RM rows question Further information is requested
#443 opened Mar 6, 2024 by aerilli
5
ERROR: Intact TE annotation not found in Aros.genome.fa.mod.EDTA.intact.gff3 at EDTA.pl line 638.
#441 opened Mar 5, 2024 by chun-he-316
1
make_masked.pl Permission denied
#440 opened Mar 3, 2024 by chun-he-316
1
ERROR in TE annotation stats
#439 opened Feb 29, 2024 by shiyi-pan
9
Two genomes LTR result file has 0 bp, while the others are not.
#437 opened Feb 26, 2024 by ZhuYongli1212
3
Inflated TE counts and masked bp in EDTA annotation after removal of part of the genome
#434 opened Feb 20, 2024 by Nyasita
3
Exploring the Discrepancies between TEanno.gff3 and TElib.fa
#433 opened Feb 16, 2024 by khjia
2
Concatinating CDS files for panEDTA question Further information is requested
#431 opened Feb 10, 2024 by Isoris
1
Testing output
#429 opened Feb 8, 2024 by G-Thomson
3
PanEDTA Line Detection
#424 opened Jan 30, 2024 by sjteresi
7
LINE search takes much longer compared to other steps
#421 opened Jan 22, 2024 by foriin
3
ProTip! What’s not been updated in a month: updated:<2024-04-14.