for keeping the PAINT GAF files up to date
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Updated
May 9, 2017 - Java
for keeping the PAINT GAF files up to date
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Material used for a bioinformatics computer lab course, covering DNA/RNA sequence assembly and analysis, phylogenetic analysis, gene functional annotation, and metagenomic analysis
Perform annotation deepening and satisfiability checking for GO annotations in GAFs
Snakemake pipeline to benchmark 11 functional pathway annotation systems
A back-end functional annotation database for the hg19 reference genome inspired by the FAVOR project.
Package for improving the functional annotation of bacterial genomes, classification of protein-coding sequences into clusters of orthologous groups, and visualization of the final annotated genome.
Knowles Lab Research: determine which genetic variants cause a phenotype with non-binary functional annotations
Adjustment of MAKER's functional annotation scripts
factR: Functional Annotation of Custom-assembled Transcripts in R
TAIFA is a workflow for conducting Whole-Genome Sequencing (WGS) of bacteria
Nextcast: a software suite to analyse and model toxicogenomics data
A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch
A multi-way annotator for genetic elements and genetic variations
GitHub repository for the NodeJS/Express REST web service go-api-sparql. Used for the front-end www.geneontology.org/gocam.
Software for monitoring metagenomes using nanopore sequencing reads
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
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