de-novo-assembly
Here are 21 public repositories matching this topic...
Algorithm to parse, assemble and align genomic sequences by use machine learning techniques. The resulting sequences are used to form NCBI-BLAST respects and return sequence homologs.
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Mar 12, 2023 - Python
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
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Jun 20, 2017 - Shell
Cleavage site prediction via de novo assembly
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Feb 21, 2019 - Python
Bio Big Data and Precision Medicine Training Course
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Apr 26, 2019
Deep learning model for classifying reads in de novo genome assembly.
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Dec 8, 2020 - Python
Scripts for de novo genome assembly
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Feb 25, 2024 - Python
A compilation of all the programs in my bioinformatics course
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Jan 12, 2023 - Python
De novo repeat inference from long reads
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Jul 21, 2021 - Java
SMP: A Salmonella Methylation analysis Pipeline
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Jan 28, 2021 - R
De novo repeat inference from long reads
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Nov 26, 2023 - Java
Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
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Jan 15, 2022 - HTML
Targeted analysis of alternative polyadenylation of candidate genes with RNA-Seq data
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Feb 22, 2019 - Python
Yet Another De Novo Assembler (Work in progress)
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Jun 30, 2023 - Python
De Bruijn graph-based De Novo genome assembly CLI tool
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Jul 20, 2020 - Scala
This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir
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May 21, 2017 - C++
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
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May 10, 2023 - C
Damage parameter estimation for ancient DNA
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Sep 1, 2023 - Python
Genome assembler de novo that uses De Bruijn graph.
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Jul 23, 2019 - Java
Compacted and colored de Bruijn graph construction and querying
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Mar 25, 2024 - Rust
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