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@algbio

Algorithmic Bioinformatics Group @ University of Helsinki

Popular repositories

  1. ggcat ggcat Public

    Compacted and colored de Bruijn graph construction and querying

    Rust 68 11

  2. themisto themisto Public

    Space-efficient pseudoalignment with a colored de Bruijn graph

    C++ 48 3

  3. GraphChainer GraphChainer Public

    An accurate aligner of long reads to a variation graph, based on co-linear chaining

    C++ 25 3

  4. SBWT SBWT Public

    Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

    C++ 21 7

  5. emerald emerald Public

    EMERALD calculates safety-windows by exploring the suboptimal alignment space

    C++ 16

  6. matchtigs matchtigs Public

    Minimum plain text representation of kmer sets

    Rust 15 5

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