List of software/websites/databases/other stuff for genome engineering
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Updated
May 14, 2024
List of software/websites/databases/other stuff for genome engineering
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Synthego ICE - Inference of CRISPR Editing software
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Analysis package for processing counts from genome-wide CRISPR/Cas9 screens
Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)
Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.
FlashFry: The rapid CRISPR target site characterization tool
Predicting Cell Health with Morphological Profiles
CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).
CRISPR, faster, better – The Crackling method for whole-genome target detection
A software tool for personalized and allele-specific CRISPR editing.
A gRNA database generation tool.
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Comprehensive design of CRISPR gRNAs for nucleases and base editors
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
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