An R shinny app for Substructure Search in MIBiG database.
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Updated
Nov 9, 2020 - R
An R shinny app for Substructure Search in MIBiG database.
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
💎 Resources of Biosynthetic Gene Clusters related databases and tools.
biosynthetic-gene-clusters toolkit
ALL-BGCs: An Integrated Pipeline for Metagenome Mining for Biosynthetic Gene Clusters
Case studies of reproducibility in bioinformatics: Metabolomics
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
Methods and classes to support Biosynthetic Gene Cluster analysis
The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
GEne Cluster prediction with COnditional random fields.
(Meta-)genome screening for functional and natural product gene sequences
Similarity networks of biosynthetic gene clusters
BGC Detection and Classification Using Deep Learning
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