A fully reproducible and state-of-the-art ancient DNA analysis pipeline
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Updated
Apr 26, 2024 - Nextflow
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Coprolite host Identification pipeline
The mitochondrial workbench
Ancient DNA Read Simulator for Metagenomic
R Package - Spatiotemporal Ancestry Interpolation and Search
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach
Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest
Estimating temporally variable selection intensity from ancient DNA data
Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
Scripts used by George S. Long
Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
Pipeline for generation of fasta unique capture-probes from a set of genomes
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