A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
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Updated
Jun 3, 2024 - Python
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
No more searches, just verifiably accurate answers
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
Reconstruct high-dimensional spectral representations of tinnitus using reverse correlation
Sequence based PPI prediction algorithm is developed using Xgboost. Around 73,000 positive and negative interacting protein pairs were extracted from Pan’s PPI dataset
Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases
A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
R package for delineating temporal dataset shifts in Eletronic Health Records
Heart Failure Detection with Deep Learning project for the University Course 'Biomedical Data Management and Analysis'.
compilation for different projects code in python, c++. visual basic, matlab, labview, java,html
Mechanical, electrical and control system for disabled people assistance code on arduino (ç++)
web based Non linear optimization for health assistance code on php
A Curated List of Computational Biology Datasets Suitable for Machine Learning
A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
Just a list of Singularity definition files maintained by the Biomed Applications Group
A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Engaged in processing infant MRI data, primarily concentrating on crafting scripts to quantify muscle volume and length in the lower limbs.
Building CNN models to detect and classify brain tumors using images of MRI scans
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