DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
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Updated
Dec 30, 2023 - HTML
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
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