Accurate sample inference from amplicon data with single nucleotide resolution
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Updated
May 27, 2024 - R
Accurate sample inference from amplicon data with single nucleotide resolution
Versatile open-source tool for microbiome analysis
Assembly and intrahost/low-frequency variant calling for viral samples
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Reference-based consensus creation
Bioinformatics Pipeline
micca - MICrobial Community Analysis
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
The is mostly a wrapper tool using phyloseq and microbiome R packages.
zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
In-silico PCR, primer design and padlock design for in-situ sequencing
A pipeline to analyse marine fish amplicon data
A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
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