amplicon
Here are 48 public repositories matching this topic...
process raw reads from ubiome
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Aug 6, 2018 - Python
Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code
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Aug 17, 2018 - Jupyter Notebook
Accel Amplicon HS wMID
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Oct 3, 2018 - Shell
A unified searchable database of 16S rRNA amplicon libraries
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Oct 14, 2018 - Python
Visualizes breakpoint graphs generated by AmpliconArchitect; simulates the effects of long read data on the graph
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Mar 22, 2019 - Python
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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May 17, 2019 - Python
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
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Jul 20, 2019
micca - MICrobial Community Analysis
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Feb 12, 2020 - Python
PCAS: check the coverage of your primer pair before putting on amplicon sequencing
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Sep 25, 2020 - Python
A python package to process UMI tagged mixed amplicon metabarcoding data.
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Mar 20, 2021 - Python
Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
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Apr 20, 2021 - Python
Targeted characterisation of short structural variation.
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Jan 12, 2022 - Python
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
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Feb 10, 2022 - Java
extract long read subsequences from a pair of primers
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Feb 11, 2022 - Shell
READY TO USE. Repository containing guidelines and templates for archiving amplicon sequencing data with ESS-DIVE repository.
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Aug 24, 2022
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