🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Rapid standardisation and quality control of GWAS or QTL summary statistics

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

Mixed models @lme4 + custom covariances + parameter constraints

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

Create LocusZoom-style plots in R.

QTL mapping with binmap data

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

R package for random-effect multiple QTL mapping in autopolyploids

A workflow based on QTLtools to run cis- and trans-QTL analyses.

R interface to SOLAR

QTLTableMiner++ tool for mining tables in scientific articles

A comprehensive QTL analysis tool by multivariate linear mixed model.

Kernelized HAplotype-based MIXed model association mapping (KHAMIX)

Scripts for various molecular quantitative trait locus (xQTL) analysis.

Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest

MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading

QTL Bayesian Interval Mapping

GUI for binQTL