Analysis of RNA-Seq data for approximately 3500 breast tumors from the SCAN-B project to investigate differential splicing patterns between molecular subtypes and clinical phenotypes
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Updated
May 23, 2024 - R
Analysis of RNA-Seq data for approximately 3500 breast tumors from the SCAN-B project to investigate differential splicing patterns between molecular subtypes and clinical phenotypes
Repository for method to analyse the relationship between germline variants and somatic mutations and alternative splicing in breast cancer patients based on RNA-Seq data,
SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution
Second version of IntroVerse
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
Spatial dissimilarity analysis in single cells
A network-based approach for exon set enrichment
This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
This GitHub repo supports a project, led by Delphine Galiana. It explores the innate immune response to viral infections, focusing on the role of plasmacytoid dendritic cells (pDCs) and the impact of alternative splicing in their antiviral response.
Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach
Snakemake pipeline for alternative slicing analysis with VAST-TOOLS
This study is using scRNA-seq to study the expression and regulation of alternative splicing (AS) events in single cells
Interactive R package to quantify, analyse and visualise alternative splicing
Lightweight and Fast; RNA-seq quantification at the event-level
Variation in Gene caused by Mutation and Alternative Splicing: Identification and Characterization of Pathogenic Variants in TRY, OCA2, HPS-1 and OA1 Genes that leads to Albinism
Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
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