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68 public repositories
matching this topic...
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Updated
Jul 7, 2022
Python
Lightweight and Fast; RNA-seq quantification at the event-level
Updated
Dec 12, 2023
Julia
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
Updated
May 12, 2024
Nextflow
Discover differential transcript usage from polyA-captured single cell RNA-seq data
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
Updated
May 16, 2024
Python
Interactive R package to quantify, analyse and visualise alternative splicing
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Updated
Jun 16, 2022
Python
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
ISOform-guided prediction of epiTOPEs in cancer
Updated
Apr 10, 2023
Python
Updated
Apr 22, 2017
HTML
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Updated
Mar 5, 2018
Jupyter Notebook
Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.
Updated
Jan 8, 2018
TypeScript
Docker to run rMATS for splicing quantification and analysis
Updated
Mar 21, 2019
Python
Computational biology pipeline that quantifies RNA splicing and performs sQTL mapping
Updated
Apr 29, 2018
Python
Docker to run MISO for splicing quantification and analysis
Updated
Jul 18, 2017
Python
Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."
Updated
Mar 11, 2019
HTML
The statistical utility for RBP functions (SURF)
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
Updated
Jun 14, 2022
Python
Functional impact of cancer-specific isoform switching events: Visualization via STRING interaction network
Updated
Apr 27, 2023
HTML
A network-based approach for exon set enrichment
Updated
Apr 18, 2024
Python
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