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dependencies not found in singularity install #446
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I believe the problem comes down to the following:
why is EDTA saying that genometools is in ./, when it is in /usr/local/bin/gt |
I checked another HPC I have access too:
This one seems to pass.
This is an earlier version of apptainer than the other cluster. |
Did a lot more looking at the problem. This issue is in the "which" alias, some systems don't have the which --tty-only option which is causing the which statement to fail.
You need to either unalias |
Sorry, the singularity version is based on the conda recipe, which is not working at the moment. Please use the .yml file to install via conda if that works for you. Shujun |
I'm trying to use the latest image and singularity to run EDTA, it looks like EDTA can't find genometools, but I see it's installed on container. relevant info below:
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