ERROR: TE annotation stats results not found in B.purpurea.fasta.mod.EDTA.TE.fa.stat!

[Qikiiso]

Hi Shujun,

Thank you very much for providing EDTA to the world.I have installed the latest EDTA v2.2.1 using conda and run the test file successfully. However, when I ran my own data, I encountered the following error message and obtain TEanno.sum file with 0k (but I have gff3 file for TE annotation).

Here is my code:
nohup EDTA.pl --genome B.purpurea.fasta --cds Bauhinia.variegata.CDS.fa --species others --step all --sensitive 1 --anno 1 --evaluate 1 -t 32 --rmout ./moder/repeatmasker/purpurea.upper.fasta.out

And here is my EDTA.log file:
Use of uninitialized value in pattern match (m//) at /disk1/xsq/xsq/softwares/EDTA/util/call_seq_by_list.pl line 90.
Use of uninitialized value $chr_pre in hash element at /disk1/xsq/xsq/softwares/EDTA/util/call_seq_by_list.pl line 92.
Use of uninitialized value $pos in pattern match (m//) at /disk1/xsq/xsq/softwares/EDTA/util/call_seq_by_list.pl line 103.
Use of uninitialized value $pos in concatenation (.) or string at /disk1/xsq/xsq/softwares/EDTA/util/call_seq_by_list.pl line 106.
ERROR: Can not recognize this MSU position in the list!
ERROR: TE annotation stats results not found in B.purpurea.fasta.mod.EDTA.TE.fa.stat!

[wang-zewen]

Hello, I also encountered the same problem. The reason is that there is no attribute for $type when $class=snRNA in gff2bel.pl, resulting in subsequent errors related to bed files.