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Refactor benchmarks' tests #32

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wants to merge 32 commits into from
Closed

Refactor benchmarks' tests #32

wants to merge 32 commits into from

Commits on Dec 8, 2023

  1. fix benchmarks to run with new workflow struct

    @sfmig
    sfmig committed Dec 8, 2023
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Commits on Dec 11, 2023

  1. edit asv config to use this branch

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    sfmig committed Dec 11, 2023
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  2. change project name. remove dvcs

    @sfmig
    sfmig committed Dec 11, 2023
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Commits on Dec 21, 2023

  1. split tests with and without CLI inputs

    @sfmig
    sfmig committed Dec 21, 2023
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  2. pass all parameters to cellfinder_run

    @sfmig
    sfmig committed Dec 21, 2023
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  3. changed required, optional and internal fields. read_config passes. a… 

    …dd method to config class (WIP)
    @sfmig
    sfmig committed Dec 21, 2023
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  4. add signal and background data from local

    @sfmig
    sfmig committed Dec 21, 2023
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  5. add missing data config fixtures

    @sfmig
    sfmig committed Dec 21, 2023
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  6. mark GIN download data test as slow

    @sfmig
    sfmig committed Dec 21, 2023
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  7. all tests passing with default config

    @sfmig
    sfmig committed Dec 21, 2023
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  8. all tests passing with default option

    @sfmig
    sfmig committed Dec 21, 2023
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  9. make all paths input strings. move methods to class. make some fixtur… 

    …es dict. simplify other fixtures
    @sfmig
    sfmig committed Dec 21, 2023
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  10. refactor setup_workflow

    @sfmig
    sfmig committed Dec 21, 2023
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  11. cosmetic changes to fixtures

    @sfmig
    sfmig committed Dec 21, 2023
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  12. remove spurious monkeypatched cwd from merge

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    sfmig committed Dec 21, 2023
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  13. add skips that were removed in merge

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    sfmig committed Dec 21, 2023
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  14. move fixtures to code where they are used

    @sfmig
    sfmig committed Dec 21, 2023
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  15. bring back default_input_config_cellfinder fixture

    @sfmig
    sfmig committed Dec 21, 2023
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  16. finalise adding local config as parameter in test_read_cellfinder_config

    @sfmig
    sfmig committed Dec 21, 2023
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  17. add local config to remaining unit tests

    @sfmig
    sfmig committed Dec 21, 2023
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  18. add config for GIN as parameter in unit tests

    @sfmig
    sfmig committed Dec 21, 2023
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  19. add local config and GIN config to test main

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    sfmig committed Dec 21, 2023
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  20. monkeypatched home in integration tests (only works in main)

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    sfmig committed Dec 21, 2023
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  21. skip tests that use subprocess for now

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    sfmig committed Dec 21, 2023
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  22. monkeypatch pooch.retrieve when forcing download

    @sfmig
    sfmig committed Dec 21, 2023
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  23. make config local fixture copy downloaded GIN data (rather than re-do… 

    …wnload again)
    @sfmig
    sfmig committed Dec 21, 2023
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  24. Merge branch 'smg/workflow-tests-caching' into smg/tests-refactor-ben… 

    …chmarks
    @sfmig
    sfmig committed Dec 21, 2023
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  25. fix benchmarks dir name

    @sfmig
    sfmig committed Dec 21, 2023
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  26. fix benchmarks to run with workflow changes

    @sfmig
    sfmig committed Dec 21, 2023
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Commits on Jan 12, 2024

  1. Merge branch 'main' into smg/tests-refactor-benchmarks

    @sfmig
    sfmig committed Jan 12, 2024
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  2. add pointer to benchmark in asv monkeypatched config and make simpler… 

    … tests
    @sfmig
    sfmig committed Jan 12, 2024
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Commits on Jan 16, 2024

  1. add machine command to test_asv_run

    @sfmig
    sfmig committed Jan 16, 2024
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