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Issues list

[Feature] A benchmark for classification on a large dataset enhancement New feature or request
#99 opened Apr 26, 2024 by alessandrofelder
[BUG] Output folder created before running benchmarks bug Something isn't working
#98 opened Apr 25, 2024 by sfmig
@sfmig
[Feature] run benchmarks on latest development branch of tools enhancement New feature or request
#75 opened Jan 8, 2024 by alessandrofelder
3
Add more brainmapper tests enhancement New feature or request
#70 opened Jan 4, 2024 by adamltyson
[Feature] Speed up the CI tests enhancement New feature or request
#65 opened Jan 3, 2024 by willGraham01
8
[Feature] Benchmark memory usage for cellfinding workflow (Python API) enhancement New feature or request
#59 opened Dec 14, 2023 by alessandrofelder
Detect dependency breaks [Feature] enhancement New feature or request
#57 opened Dec 14, 2023 by sfmig
@sfmig
1
Comparative benchmarks [Feature] enhancement New feature or request
#56 opened Dec 14, 2023 by sfmig
@sfmig
Avoid all-catch Exception enhancement New feature or request migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package.
#40 opened Nov 13, 2023 by alessandrofelder
drop Python 3.8, support Python 3.11 migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package.
#41 opened Nov 13, 2023 by alessandrofelder
1
Move from logging to fancylog
#25 opened Oct 13, 2023 by alessandrofelder
@sfmig
1
Use pydantic instead of dataclasses to define configs? question Further information is requested
#22 opened Oct 4, 2023 by sfmig
Benchmarking functionalities that are not part of the main workflow question Further information is requested
#21 opened Oct 2, 2023 by sfmig
1
Agree on large data to be used for end-to-end tests question Further information is requested
#19 opened Sep 28, 2023 by alessandrofelder
@alessandrofelder
Create example script for access atlas data
#13 opened Sep 15, 2023 by alessandrofelder
1
Create example script for transforming data from sample to atlas space
#12 opened Sep 15, 2023 by alessandrofelder
Create example script for image registration
#11 opened Sep 15, 2023 by alessandrofelder
@alessandrofelder
1
[Feature] benchmark / smoke-test scripts: planning/structure enhancement New feature or request
#9 opened Sep 15, 2023 by alessandrofelder
@alessandrofelder @sfmig
10
Provide better error messages in case of a single corrupt file enhancement New feature or request migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package.
#43 opened Oct 10, 2022 by adamltyson
Allow for changing cube size enhancement New feature or request migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package.
#45 opened Jul 19, 2022 by MysticElephant
[Feature] storing config files in local data/output directory instead of in conda env installation directory enhancement New feature or request migrated-from-cellfinder For issues that were inherited from the migration of cellfinder into this package.
#46 opened Mar 2, 2022 by jjtukker
1
ProTip! What’s not been updated in a month: updated:<2024-03-29.