geNomad v1.6.0

Changed

• Update numba (>=0.57) and numpy (>=1.21) version requirements.
• Use casefold for sequence comparison within the Sequence class.
• Remove type annotations of methods of the Sequence class that return an instance of Sequence.
• Use console.status to log the deletion of the .tar.gz file during the execution of download-database.
• Make the conservative assignment at the family level optional via the --conservative-taxonomy parameter. This increases the amount of viral genomes assigned to a family when executing geNomad with default parameters.

Fixed

• Fix parameter names in the error message of --conservative and --relaxed (e.g. --min_score → --min-score).