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Bump to v1.6.0
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apcamargo committed Jul 31, 2023
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -6,11 +6,14 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [Unreleased]

## [1.6.0] - 2023-07-31
### Changed
- Update `numba` (`>=0.57`) and `numpy` (`>=1.21`) version requirements.
- Use `casefold` for sequence comparison within the `Sequence` class.
- Remove type annotations of methods of the `Sequence` class that return an instance of `Sequence`.
- Use `console.status` to log the deletion of the `.tar.gz` file during the execution of `download-database`.
- Make the conservative assignment at the family level optional via the `--conservative-taxonomy` parameter. This increases the amount of viral genomes assigned to a family when executing geNomad with default parameters.

### Fixed
- Fix parameter names in the error message of `--conservative` and `--relaxed` (e.g. `--min_score``--min-score`).
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2 changes: 1 addition & 1 deletion genomad/__init__.py
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Expand Up @@ -14,4 +14,4 @@
)

__author__ = "Antonio Camargo"
__version__ = "1.5.2"
__version__ = "1.6.0"

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