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Ulelab

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  1. clipplotr clipplotr Public

    A tool to facilitate comparative visualisation of CLIP data

    R 12 5

  2. ultraplex ultraplex Public

    Ultra-fast 5' and 3' demultiplexer

    Python 21 8

  3. clippy clippy Public

    A wrapper around scipy "find_peaks" function to enable peak calling of CLIP data.

    Python 1

  4. peka peka Public

    Find motifs enriched around prominent crosslinks

    Python 4 2

  5. iCount-Mini iCount-Mini Public

    Forked from genialis/iCount

    iCount, protein-RNA interaction analytics

    Python 1

Repositories

Showing 10 of 23 repositories
  • peka Public

    Find motifs enriched around prominent crosslinks

    Python 4 GPL-3.0 2 0 0 Updated Apr 29, 2024
  • nf-quantseq Public
    Nextflow 1 MIT 0 0 0 Updated Apr 26, 2024
  • ultraplex Public

    Ultra-fast 5' and 3' demultiplexer

    Python 21 8 20 0 Updated Apr 23, 2024
  • LIN28A_RNPreassembly_bioinformatics Public

    This repository contains the source code used for bioinformatic analyses presented in the paper by Modic et al., 2024 "Poised PABP-RNA hubs implement signal-dependent mRNA decay in development".

    Jupyter Notebook 0 0 0 0 Updated Mar 29, 2024
  • clipplotr Public

    A tool to facilitate comparative visualisation of CLIP data

    R 12 MIT 5 0 0 Updated Nov 29, 2023
  • cluster_kmers Public

    Get clusters of k-mers based solely on their sequence or in combination with enrichment in PEKA.

    Python 0 GPL-3.0 0 0 0 Updated Nov 21, 2023
  • gtf-ops Public

    Filtering GENCODE or ENSEMBLE annotation in GTF format. Annotating missing regions in iCount genomic segmentation.

    Python 0 GPL-3.0 0 0 0 Updated Sep 29, 2023
  • bs_assign Public

    Find groups of motifs around genomic landmarks of interest

    Python 0 GPL-3.0 0 0 0 Updated Sep 29, 2023
  • cv_coverage Public
    Python 1 GPL-3.0 0 0 0 Updated Sep 28, 2023
  • germ Public

    An algorithm for scoring Generalised RNA Multivalency

    R 3 MIT 1 4 1 Updated Sep 14, 2023
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