Pinned

1. nf-core/clipseq nf-core/clipseq Public

   CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

   Nextflow 16 25

2. ulelab/clipplotr ulelab/clipplotr Public

   A tool to facilitate comparative visualisation of CLIP data

   R 13 5

3. luslab/crispr-indels luslab/crispr-indels Public

   Python 3 4

4. luslab/hiclipr luslab/hiclipr Public

   hiCLIP data analysis package

   R 3 1

5. ulelab/tdp43-mutants ulelab/tdp43-mutants Public

   Repository for "TDP-43 condensation properties specify its RNA binding and regulatory repertoire"

   Jupyter Notebook 1

6. tosca tosca Public

   Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data

   Nextflow 3 2