The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
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Updated
May 13, 2024 - R
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
VIral GEnome ASsembly pipelines for WGS
vSNP -- validate SNPs
vcfdist: Accurately benchmarking phased variant calls
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Clinical Whole Genome and Exome Sequencing Pipeline
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
An in silico tool to predict Shigella serotypes
esohinformatics
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses. Flexible to datasets that combine high/low coverage and historical/fresh samples.
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
An interacitve python interface for inspection of somatic mutations
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
An atlas of high-quality Bacillus cereus group genomes with standardized, manually curated metadata
This repo houses the data, analysis scripts and results for our rice diversity panel drought induced oxidative stress enzymes and markers GWAS project
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