Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Updated
May 13, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Whole Genome Sequencing analysis, WGS analysis
An R package for performing STAAR procedure in whole-genome sequencing studies
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
vSNP -- validate SNPs
Whole Exome/Whole Genome Sequencing alignment pipeline
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
Detect novel (and reference) STR expansions from short-read data
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Clinical Whole Genome and Exome Sequencing Pipeline
BACTpipe: An assembly and annotation pipeline for bacterial genomics
JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
vcfdist: Accurately benchmarking phased variant calls
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
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