Skip to content

Issues: aryarm/as_analysis

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

26 Open 50 Closed
26 Open 50 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Specify in docs that vcf file needs accompanying index file
#79 opened Apr 15, 2021 by zrcjessica
1
document meaning of columns in output of R scripts
#78 opened Apr 12, 2021 by aryarm
add config option for supporting reads cutoff enhancement New feature or request
#77 opened Mar 31, 2021 by aryarm
priorities
#75 opened Mar 15, 2021 by aryarm
12 tasks
big picture: turning this into a command line tool enhancement New feature or request
#74 opened Mar 15, 2021 by aryarm
1
create a small, test dataset and a testing suite enhancement New feature or request good first issue Good for newcomers
#73 opened Feb 4, 2021 by aryarm
2
simplify how samples are specified enhancement New feature or request
#72 opened Feb 4, 2021 by aryarm
4
allow BAM files as input to the WASP subworkflow enhancement New feature or request gcp
#71 opened Jan 31, 2021 by aryarm
1
Change name of column for proportion of ref allele in rna.csv.gz
#70 opened Jan 25, 2021 by zrcjessica
add support for peak regions for ASOC analysis
#69 opened Jan 25, 2021 by zrcjessica
1
2
add error messages for dataframes with 0 rows after filtering
#68 opened Jan 21, 2021 by zrcjessica
1
remove quoting in CSVs output by R scripts enhancement New feature or request
#67 opened Jan 21, 2021 by aryarm
support for single-end RNA-seq and ATAC-seq in the WASP subworkflow enhancement New feature or request
#65 opened Jan 18, 2021 by aryarm
11 of 13 tasks
1
allow gzipped FASTAs and GTFs when using STAR enhancement New feature or request
#64 opened Jan 15, 2021 by aryarm
1
extract heterozygotes from the vcf before converting to h5 files enhancement New feature or request
#63 opened Jan 8, 2021 by aryarm
1
ATAC-seq support enhancement New feature or request
#61 opened Oct 2, 2020 by aryarm
1
filter to only GQ tag before extracting GQ tags per sample enhancement New feature or request gcp
#59 opened Sep 19, 2020 by aryarm
set disk_mb values appropriately bug Something isn't working gcp
#58 opened Sep 1, 2020 by aryarm
allow for linking samples from a terra bucket enhancement New feature or request gcp
#57 opened Aug 28, 2020 by aryarm
2
improve dependency installation on cloud enhancement New feature or request gcp
#56 opened Aug 28, 2020 by aryarm
preemptible instances enhancement New feature or request gcp
#55 opened Aug 28, 2020 by aryarm
snps that don't overlap a gene bug Something isn't working
#50 opened May 22, 2019 by aryarm
1
LD_LIBRARY_PATH problems bug Something isn't working
#49 opened Sep 11, 2018 by aryarm
@aryarm
2
r packages enhancement New feature or request
#47 opened Aug 27, 2018 by aryarm
@aryarm
use snakemake validation enhancement New feature or request
#5 opened Jun 4, 2018 by aryarm
@aryarm
1
ProTip! What’s not been updated in a month: updated:<2024-04-30.