Scripts I have written as a graduate research assistant
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Updated
Apr 16, 2024 - Python
Scripts I have written as a graduate research assistant
TE Classifier Using CNN
Evolutionary genomics of chromosomal inversions in Atlantic herring
Supplementary to publication "DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows"
Interactive Visualization Browser for Transposable Elements (TEs) community
Simultaneous analysis of genes and transposable elements (TEs) from 10X scRNAseq datasets derived from CD and NIBD samples using Alevin.
A simple bash pipeline for extension and edge polishing of transposable elements consensi.
Singularity image for PASTEC (transposable elements classification tool).
CLI tool for bioinformatic in-depth exploration of small RNA-seq data
Determine the sequence type of specific transposable elements in bacterial isolates.
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
Build your own deep learning transposable elements classifier with ease.
transposon and LD analysis for replicated experimental evolution fruit fly populations
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Find and classify transposable elements using convolutional neural networks.
Interrogating the influence of Transposable Element insertions on transcriptional dynamics
Transposable Element Finder - Detection of active transposable elements from NGS data
bs-ATLAS-seq analysis scripts
Snakemake pipeline to analyze retrotransposable element 'omics data.
Useful python scripts for genomic analyses
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