tcga-data
Here are 50 public repositories matching this topic...
Scripts to manage biotab files from TCGA.
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May 8, 2024 - R
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
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Apr 29, 2024 - Python
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
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Apr 29, 2024 - Python
TCGAbiolinks
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Apr 10, 2024 - R
The Cancer Genome Atlas (TCGA), a cancer genomics reference program, has molecularly characterized more than 20,000 primary cancer samples and paired normal samples covering 33 types of cancer. This joint effort between the NCI and the National Human Genome Research Institute began in 2006.
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Mar 23, 2024 - Python
R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
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Feb 15, 2024 - R
Identifying conserved functional modules in multiple biological networks
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Jan 13, 2024 - MATLAB
Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
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Dec 18, 2023 - TeX
SOPHYSM - SOlid tumors PHYlogenetic Spatial Modeller - Julia GUI for Histological Analysis and Cancer Simulation
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Apr 5, 2024 - Julia
Cancer-dedicated gene set interpretation
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Aug 30, 2023 - R
Computational approach to identify Survival associated Pairwise Gene Expression states.
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Jul 16, 2023 - R
Supplementary R scripts for the manuscript "Disrupting PGE2/EP3 signaling in cancer-associated fibroblasts limits mammary carcinoma growth but promotes metastasis"
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Mar 30, 2023 - R
This project focuses on analyzing gene expression data from TCGA cancer data to derive associations among genes as well as disease phenotypes, co-expression signatures, and survival analysis.
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Mar 25, 2023 - MATLAB
AI HUB Project: Classification of Lung Cancer Slide Images using Deep-Learning
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Feb 15, 2023 - Jupyter Notebook
Bioinformatics Pipeline
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Oct 7, 2022 - R
Notebooks for "A topic model analysis of TCGA transcriptomic data of breast and lung cancer"
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Mar 23, 2022 - Jupyter Notebook
BSc thesis: "Convolutional Neural Networks and their Application in Cancer Diagnosis based on RNA-Sequencing"
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Mar 9, 2022 - Jupyter Notebook
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
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Jan 22, 2022 - R
Tumor2Graph: a novel Overall-Tumor-Profile-derived virtual graph deep learning for predicting tumor typing and subtyping.
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Sep 2, 2021 - Python
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