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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

Pinned

  1. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 177 23

  2. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 142 8

  3. CLAM CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 901 318

  4. MI-Zero MI-Zero Public

    Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023

    Python 78 3

  5. HIPT HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 455 83

  6. PathomicFusion PathomicFusion Public

    Fusing Histology and Genomics via Deep Learning - IEEE TMI

    Jupyter Notebook 254 76

Repositories

Showing 10 of 23 repositories
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    Python 42 2 0 0 Updated May 9, 2024
  • CLAM Public

    Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

    Python 901 GPL-3.0 318 10 4 Updated Apr 29, 2024
  • CPATH_demographics Public

    Demographic bias in misdiagnosis by computational pathology models - Nature Medicine

    Python 12 2 1 0 Updated Apr 29, 2024
  • JavaScript 0 MIT 0 0 0 Updated Apr 7, 2024
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 142 8 3 0 Updated Apr 6, 2024
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 177 23 11 1 Updated Mar 29, 2024
  • SurvPath Public

    Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

    Python 42 2 0 0 Updated Mar 25, 2024
  • HIPT Public

    Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

    Jupyter Notebook 455 83 19 3 Updated Mar 19, 2024
  • MAPS Public

    Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

    Jupyter Notebook 29 5 0 0 Updated Mar 14, 2024
  • Patch-GCN Public

    Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

    Python 101 GPL-3.0 28 5 0 Updated Jan 26, 2024

People

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