Repository that hosts the course materials for the 2017 edition of Programming Practices for Research in Economics at the University of Zurich
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Updated
Sep 16, 2017 - HTML
Repository that hosts the course materials for the 2017 edition of Programming Practices for Research in Economics at the University of Zurich
snakemake workflow for random forest based feature selection on chromHMM data
The evaluation of MERFISHtools and the underyling model as published in the corresponding article.
Origin mechanisms of SAARs – use case of L-SAARs in signal peptides among higher Eukaryotes
Bioinformatics pipeline for nanopore sequencing data
Management of References for Yourself
The ENCODE-DCC demo workflow in Snakemake (under development)
A minimal Snakemake pipeline.
Snakemake based workflow for analysis of dnaseq data for calling germline/somatic mutations
Snakemake - GRASS interface
Detect replication slippage variants at microsatellite regions
quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
A simple Snakemake workflow to perform network analyses using the Python Geneset Network Analysis (PyGNA) package.
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
Houses a snakemake workflow used for multiple sequence alignment and maximum likelihood phylogeny construction of genes or proteins. Originally used to study sex determination genes in mosquitoes.
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
Map and post-process your bams for SNP calling
Snakemake workflow for Salmon quantification and FastQC quality controls
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