A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
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Updated
May 29, 2024 - Python
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
utility for writing the snakemake files with faster iterations.
Statistical inference of recent positive selection using IBD segments
Snakemake profile for running jobs on an LSF cluster
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
Snakemake pipelines for nanopore sequencing data archiving and processing
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
A minimal Snakemake pipeline.
A snakemake workflow for the OrthoEvol python package.
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