A minimal Snakemake pipeline.
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Updated
Sep 2, 2019 - Python
A minimal Snakemake pipeline.
A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
utility for writing the snakemake files with faster iterations.
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
A snakemake workflow for the OrthoEvol python package.
Statistical inference of recent positive selection using IBD segments
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
Snakemake profile for running jobs on an LSF cluster
Snakemake pipelines for nanopore sequencing data archiving and processing
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