Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc

This repo contains scripts to analyze Single-Cell RNA-Seq data obtained from human enteriod cell culture.

CD24 CART single cell analysis

STREAM: enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data

Graphical Models for sc-RNA seq Analysis

Identifying spatial pattern genes

Triple single cell analysis of microglia cell types for studying PIEZO1 alterations in Alzheimer patients

Single Cell guided Pangenome analysis pipeline using SPAdes, CheckM, GTDB-Tk, Prokka, Roary and extensive quality control.

collab | DFC

Project for the course "Single Cell and Spatial Omics", held by prof. Tebaldi at UniTN, for the Master's degree in Quantitative and Computational Biology.

Pipeline for the analysis of single-cell familial data from multiplex clonal assay

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

Files for a Bioconductor workflow for low-level scRNA-seq data analyses.

Scripts for single cell variant calling

Detect transition genes for each branch of the trajectory.

Single-cell sequencing is a novel technology to define intercellular heterogeneity, rare cell types, cell genealogies or disease evolution based on profiling thousands of cells in parallel. Identification of cellular subpopulations from heterogeneous populations of cells could be done by data clustering.

Web application for exploration of scRNA-seq datasets

Streamlit App to explore 2D Neuron Morphologies from Gene Expression

Towards Intra-Tumor Heterogeneity Deconvolution from Bulk RNA-seq data @BoevaLab