scrna-seq
Here are 365 public repositories matching this topic...
scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735
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Feb 16, 2021 - R
Programming in practice based on RNA-seq, scRNA-seq, ATAC-seq, scATAC-seq or ChIP-seq.
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Apr 22, 2021 - HTML
Single-Cell Data Science
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Nov 30, 2020 - Python
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
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Dec 8, 2020 - R
Code for exploration of non-coding elements in single-cell RNA seq data
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Sep 12, 2021 - Jupyter Notebook
ThunderBio scRNA-seq pipeline
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May 9, 2024 - Shell
Effect of temperature stress on Plasmodium Falciparum. Code for data analysis. Rshiny app for data exploration.
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Sep 12, 2021 - R
Code and access to data related to the SIFT-seq publication by Chandran et al., Nature Medicine (2022)
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Mar 3, 2022 - HTML
Graph Auto-Encoders (GAE) for Gene Regulatory Network (GRN) completion using scRNA-Seq datasets
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Feb 4, 2022 - Python
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
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Jun 13, 2023 - Shell
scRNA-seq to analyze cells during human pluripotent stem cell differentiation into islets at D11, D14, D21, D32, D39.
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Oct 30, 2023 - Jupyter Notebook
scCTS: identifying the cell type specific marker genes from population-level single-cell RNA-seq
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Apr 23, 2024 - R
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Oct 26, 2023 - Python
Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript
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Mar 16, 2024 - Jupyter Notebook
Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment
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Sep 8, 2020 - R
Tobias Beers, Perry Moerland: MSc Computational Science project on (hierarchical) PPCA-techniques for scRNA-seq data.
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Apr 16, 2023 - Jupyter Notebook
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