MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
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Updated
Feb 22, 2018 - C++
MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
DNA/RNA folding in Nim
Agente Inteligente Basado en Redes Neuronales Artificiales para la Identificación de los determinantes de la estadía de los pacientes de la UCI del HUAPA de Cumaná, estado Sucre
A gym environment for the research which apply the reinforcement learning algorithm to the RNA structure prediction
Tools For Computational Biology
Tool for analysing BLAST output for ncRNA sequences
Python bindings to use the historical GTFold library natively in the RNADB construction script and natively with Python3. See the WIKI pages for documentation and installation notes.
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
nucleic acid folding
Alignment of RNAs
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding
locality-aware invariant Point Attention-based RNA ScorEr
RNA folding and codon optimization in pure Rust
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
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