A Python API for the RCSB Protein Data Bank (PDB)
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Updated
May 15, 2024 - Python
A Python API for the RCSB Protein Data Bank (PDB)
from protein alignments to deep learning preparatory.
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Directed Evolution in Silico
a ruby gem for protein alignments. index the protein alignments, extract the regions of interest, extract the locus, extract the alignments
Implement, train, tune, and evaluate a transformer model for antibody classification with this step-by-step code.
💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery
🧬 Toolkit for generating various numerical features of protein sequences
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
Protein Language Model (pLM) Powered Protein Crotonylation (Kcr) Modified Site Predictor
stitching coding regions from exon alignments for the protein to genome alignments.
plotting and summary information tools for the mRNA proteome to genome alignments.
plotting and summary tools for the protein to genome alignments for genome annotations.
intergenic region analyzer from protein alignments to draft genomes.
protein-annotator python package for analyzing protein alignments to draft genomes.
preparing and visualizing proteome to genome alignments
Spectral Framework For AI Model Evaluation
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
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