Toolbox for molecular animations in Blender, powered by Geometry Nodes.
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Updated
May 13, 2024 - Python
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Protein Graph Library
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
👋 Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
A Python API for the RCSB Protein Data Bank (PDB)
CA-2-HCOMB is a tool for simplifying single-chain protein structures from PDB files into manageable models like various honeycombs, retaining essential information for in-depth computations. It's efficient for large datasets and machine learning, and user-friendly for research and education.
Lattice2Backbone is a software tool that converts lattice representations of protein structures into detailed, carbon alpha-only backbone structures, bridging the gap between simplified models and comprehensive biological analysis in structural biology and bioinformatics.
Versatile computational pipeline for processing protein structure data for deep learning applications.
The specification of the MMTF format for biological structures
Clickable PDB statistics: synchrotrons and MX software
Open Source, Mostly just clicking mouse to finish a simulation with Ambertools and OpenMM. It was designed to use locally but another notebook to finish the simulaiton on Colab was attached as well.
Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Deep functional residue identification
PDB parser in Haskell
Utility to parse PDB(Protein Data Bank) file format 3.3 into JSON format
A Python Framework for Integrating Classical and Quantum Mechanical Simulation Data, Experimental Data, and Cheminformatics into a Unified Predictive Engine for Macromolecular Design
Methods for mapping genomic data onto 3D protein structure.
Structural Bioinformatics Training Workshop & Hackathon 2018
Ribbon diagrams of proteins in #golang.
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