A modification to Sikora's admixr to make it more accesible
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Updated
Feb 20, 2019 - R
A modification to Sikora's admixr to make it more accesible
Tool for inferring global ancestry proportions in admixed samples using deep learning
Public description of LDGH Genotype Imputation v.2. pipeline developed in Phyton by Thiago Peixoto Leal, with the collaboration by Nathalia M. Araujo, Marilia Scliar and Ricardo Lyra. The user may choose to use SHAPEIT2 or SHAPEIT4 for haplotype inferences, and IMPUTE2 or IMPUTE4 for imputation. For further details or if you are interested in us…
Genomics Commons
A Genetic Algorithm project for solving The Traveling Salesman Problem "TSP"using Roulette Wheel Selection, Ordered Crossover (OX) and Mutation Swap Mutation
Population-based pathway analysis of SNP-SNP coevolution
Publication Materials for "Extending Approximate Bayesian Computation with Supervised Machine Learning to Infer Demographic History from Genetic Polymorphisms Using DIYABC Random Forest" in *Molecular Ecology Resources* special issue
Plant.ID: Molecular Identification of Plants
Data files, scripts and output employed in the paper entiled "Strong and lasting impacts of global warming on baleen whales and their prey" published in Global Change Biology
Miscellaneous scripts that do not really deserve their own repos
Analysis pipeline associated with master's thesis on the population structure, demographic history and distribution of fitness effects of birches in Scandinavia.
This project leverages PLINK for GWAS Quality Control, focusing on SNP analysis and PCA for ancestry insights, showcasing the vital role of bioinformatics in enhancing population genetics research.
A Docker repository for a course on analysis of genomic data
Inferring the timing and strength of natural selection and gene migration in the evolution of chickens from ancient DNA data
Caught on the jump! Next-generation genomic mobile element and structural variant identification tool.
Test for selective neutrality using relative likelihood.
Assignments of the Population Genetics course @ University of Groningen
R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the frequency of pairwise genetic distances among individuals.
Scripts and notes related to the manuscript: Stuart KC, Edwards, RJ, Sherwin WB, Rollins, LA. 2022 Contrasting patterns of single nucleotide polymorphisms and structural variations across multiple invasions. Molecular Biology and Evolution, 40(3): msad046. https://doi.org/10.1093/molbev/msad046
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