A Bio2BEL package for PFAM (https://pfam.xfam.org/)
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Updated
Nov 13, 2019 - Python
A Bio2BEL package for PFAM (https://pfam.xfam.org/)
Set of tools for protein sequence enrichment and protein domain finding
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
Scripts to calculate sequence similarity networks (SSNs) and clustering of protein sequences.
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
Minimal benchmark test to compare zstd (zstandard) compression with gzip for the datafile Pfam-A.full.gz
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
A deepchain-app to predict protein family 🔬
Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.
Find NLR hmms in protein sequences.
Co-occurrence of enzyme domains
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