Peptide Mapping in Genome and peptide Detection in Transcriptomes
-
Updated
Jul 13, 2023 - C++
Peptide Mapping in Genome and peptide Detection in Transcriptomes
Given files with sequences containing signal peptides and sequences not containing signal peptides, multiple classifiers were tested to see which performs best in the classification of signal peptide sequences.
Project for course DD2404. The project focuses on creating a classifier for proteins with signal peptides, using machine learning. Currently, the scripts are based on Convolutional neural networks, but I might implement a GAN and a Hidden Markov Model too.
📦 R package to visualise peptide sequences
A set of tools for different calculation of sequences of peptide, dna, rna, etc.
SARS-CoV-2 Peptide Vaccine, Gen 12
Highly customizable research-oriented peptide search engine
Electronic lab notebook for organic chemistry
SARS-CoV-2 Peptide Vaccine, Gen 11
Protein Cleaver is a versatile tool for protein analysis and digestion.
mPARCE: Protocol for iterative optimization of modified peptides bound to protein targets
Snakemake-based computational workflow for neoantigen prediction from diverse sources
A parametric approach for molecular encodings using multilevel atomic neighborhoods applied to peptide classification
Wrapper-method to select sub-set of features for classifying antimicrobial peptides
The GAN model for designing AMP
Tools for exploration and analysis of biochemical data like genomics and proteins
Application of deep generative model discovers novel and diverse functional peptides against microbial resistance
Python script to visualize helical wheels based on input sequence.
Add a description, image, and links to the peptide topic page so that developers can more easily learn about it.
To associate your repository with the peptide topic, visit your repo's landing page and select "manage topics."