SPP - R package for analysis of ChIP-seq and other functional sequencing data
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Updated
Jan 25, 2018 - C++
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Benchmarking ChIP-seq peak callers
A small script to find peaks from the .bigWig file and output them in a .bed file.
Peak Calling algorithm for Chromatin-immunoprecipitation sequencing (ChIP-seq) data
The ChIP-Seq peak calling algorithm using convolution neural networks
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
R package for mining, calling, and importing epigenomic peaks.
Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.
Peak classification with Deep Learning
cell-free ChIP-seq pipeline
🥇 Maximum homogeneity clustering for one-dimensional data
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
ChIP-Seq processing pipeline on snakemake
ChIP-seq peak-calling, QC and differential analysis pipeline.
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
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