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20 public repositories
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A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
Updated
Mar 15, 2019
Python
Mapping Pharos Targets to PDB IDs
Updated
Jun 5, 2019
Jupyter Notebook
A PDB Viewer Application implemented completely in JavaFX
uwseds-group-OPMxplore created by GitHub Classroom
Updated
Dec 14, 2017
Jupyter Notebook
Various statistics on the Protein Data Bank
Updated
Feb 11, 2024
HTML
This script enables users to filter through PDB archive in order to obtain simple data from each file.
Updated
Jan 10, 2023
Perl
Modules for PDB Data parsing and Ramachandran Analysis.
Updated
Feb 16, 2024
Python
基于modeller官网脚本进行开发的序列比对脚本
Updated
Jun 12, 2021
Python
Fixes mmCIF protein structure files
Updated
Mar 24, 2023
Python
Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
Updated
May 18, 2021
Python
Guia de programas e ferramentas de bioinformática e química computacional
Visualization of proteins directly from the PDB database or from a .pdb file.
Benchmarks for reading and interpreting mmCIF files
Updated
Aug 30, 2021
Python
A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest
Updated
Oct 3, 2023
Python
A Python script to map PDB ID + chain ID to UniProt ID.
Updated
Mar 7, 2024
Python
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
Updated
May 23, 2024
Python
Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.
Standalone program to download PDB Symbol files for debugging without WDK
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