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  1. AlphaCutter AlphaCutter Public

    This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.

    Python 9 2

  2. NbX NbX Public

    This repository contains the NbX models for the re-ranking of nanobody–antigen binding poses.

    Python 3 1

  3. FPredX FPredX Public

    This repository contains the FPredX models for the prediction of excitation maximum, emission maximum, brightness and oligomeric state of fluorescent proteins.

    Python 3 2

  4. pdb2uniprot pdb2uniprot Public

    A Python script to map PDB ID + chain ID to UniProt ID.

    Python 11

  5. elmo1-rhog_nanobody_design elmo1-rhog_nanobody_design Public

    This repository contains codes for the regeneration of figures 3b and 3g in Tam, C., Kukimoto-Niino, M., Miyata-Yabuki, Y. et al. Targeting Ras-binding domain of ELMO1 by computational nanobody des…

    Jupyter Notebook

  6. machine_discussion machine_discussion Public

    Data and code used in the looped-ChatGPT-BARD "machine discussion" article.

    Jupyter Notebook