ngs
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Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
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May 14, 2024 - Python
Data intensive science for everyone.
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May 14, 2024 - Python
Detect iSNV and construct whole viral genomes from metagenomic samples
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May 14, 2024 - Nextflow
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
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May 14, 2024 - R
Automated Pipeline for Variant/Haplotype Calling and Filtering
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May 14, 2024 - Shell
🐳 Bio-dockers: dockerized bioinformatic tools
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May 14, 2024 - Dockerfile
Annotation and Ranking of Structural Variation
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May 14, 2024 - Tcl
Framework to benchmark germline copy-number variant detection tools from NGS data
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May 14, 2024 - R
My bioinfo toolbox
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May 14, 2024 - Python
Unified PHYling pipeline for species tree building from annotated genomes (see https://github.com/stajichlab/AAFTF and https://github.com/nextgenusfs/funannotate for assembly and annotation steps)
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May 14, 2024 - Python
Official code repository for GATK versions 4 and up
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May 14, 2024 - Java
Rust crates for working with Workflow Description Language (WDL) documents.
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May 14, 2024 - Rust
Exon is an OLAP query engine specifically for biology and life science applications.
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May 13, 2024 - Rust
A collection of Galaxy-related training material
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May 14, 2024 - HTML
Bacterial swiss-army-knife pipeline for NGS data
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May 13, 2024 - Python
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
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May 13, 2024 - Python
Supporting data for "Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients"
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May 12, 2024 - Python
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
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May 13, 2024 - Nextflow
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
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May 9, 2024 - Python
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