Benchmarking several NVIDIA GPUs with dorado
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Updated
Feb 1, 2024 - Python
Benchmarking several NVIDIA GPUs with dorado
antibiotic resistance profiling of nanopore reads
Benchmark analysis of algorithms for determining full-length mRNA isoforms by Nanopore RNA-seq data.
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
Nextflow pipeline to assemble genomes from nanopore reads.
Course for ROPES summer school, May 2023
Target site duplication assessment from alignment file and genomic location of insertion sites.
Real-Time Nanopore Analysis Pipeline: Repository for developing a real-time Nanopore sequencing pipeline to enhance cancer vaccine research. Features include real-time monitoring, sequencing endpoints, and comparative TCR analysis between Singleron and Nanopore technologies.
Pipeline with GUI for nanopore-sequencing.
PathoPore - Longer Sequences and NextFlow Faster Analysis
snakemake pipeline based on nanopolish
Finalised PDF Files
Bioinformatic pipeline for SARS-CoV-2 sequence analysis
Tool to analyze chromatin accessibility with long read sequencing technologies
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