Gromacs local stress code forked from https://bitbucket.org/mdstresslib/gromacs-ls-4.5.5
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Updated
Oct 27, 2016 - Assembly
Molecular dynamics allows the atoms and molecules to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system.
Gromacs local stress code forked from https://bitbucket.org/mdstresslib/gromacs-ls-4.5.5
F@H Data Analysis: Native Contact Calculations
Simulation of molecular dynamics of AB+C type reactions.
Ridge-regression Atomistic Force Fields in PYthon
Perform molecular dynamics experiments (MD) with NAMD on colab
An attempt to fit ab-initio materials database (e.g. Materials Project) results to FitSNAP potential.
A parallel molecular dynamics simulation algorithm for studying the thermal stability of nanoalloys.
Simulation of molecular dynamics for the argon gas.
Supporting information for Aggregate Size Dependence of Amyloid Adsorption onto Charged Interfaces
Create a consistent, documented pipline and folder structure for self-consistent MD charge optimization.
Scripts related to the Large-scale Atomic Molecular Massively Parallel Simulator
A lightweight and easy to customize python package to perform pre- and post-processing of molecular modelling
Adjust coordinates and virtual sites for use with various water models in gromacs
Conditional Generative Adversarial Network for Molecular Dynamics frame generation
Patch to implement periodic boundary conditions in the for the "Interactive Molecular Dynamics" tool written by Daniel V. Schroeder.
A C++ library for the creation of a large dataset of amino acid sidechain perturbations, own PDB Parser code included and some other things related.