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mlst-typing

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gmboowa / rMAP-2.0

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This tool provides a ready-to-use WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, Genome assembly & profiling Resistome, Mobilome & Virulome as well Pangenome & MLST typing, Blastn & Phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis of NGS data

docker microbial-genomics variant-calling cromwell wdl-workflow plasmids phylogenetic-analysis resistome virulome rmap mobilome mlst-typing eskapee insertation-sequences
  • Updated Jul 24, 2025
  • WDL

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