pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data

TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features

Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution

A poster showing TIGS project at BioForum2019, ShanghaiTech University

neoantigen depletion checking and detection

A Community Curated Immune Resource Database in R format

A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen

Prediction of interferon-gamma inducing peptides using alignment-based and alignment-free methods

An example of immunopipe

Analysis of single-cell RNA-seq data from patients with immunotherapy-related colitis.

Pharmacokinetic Modeling and Optimization of Omburtamab (8H9) Delivered Through the CSF

Discrete Event Simulation | Queue Modeling | Bayesian Optimization | Full Factorial Design. "Design and Operation of Individualized Single-use Systems: Car-T Cell Therapy". Modeling Single-use systems using stochastic optimization techniques.

T-cell receptor specificity prediction using Deep Learning

Code and data to support doi:10.1136/jitc-2020-001506

Executable of trained model presented in Boll&Vázquez Montes de Oca et al. (unpublished).