Downloads images of histological samples in full quality from Leica's WebScope Flashapplet.
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Updated
May 28, 2017 - Python
Downloads images of histological samples in full quality from Leica's WebScope Flashapplet.
Human sinoatrial node computational anatomy repository.
Custom software to allow manual counting of neurons labeled by the pesudorabies (PRV) virus. This software was written for the Texas Biomedical Device Center at UT Dallas. Images must be converted from their native format to the Microsoft "DeepZoom" format. This software relies on Node Webkit and OpenSeadragon.
Segmentation of histological images and fibrosis identification with a convolutional neural network
2D - 3D slice-to-volume registration pipeline
Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)
a toolbox for manipulation of digital pathology slides and annotations
QuantifFasga is a plugin for ImageJ whose aim is to quantify the histology of plant sections coloured with Fasga staining and digitised with whole slide microscopy scanner.
Code used to create the DeepHistReg submission to the ANHIR challenge.
Software used by the AGH team during the ANHIR challenge.
Dataset: landmarks for registration of histology images
A Python library for segmentation and classification of objects in microscopy images
An application for exporting and analysing tissue array whole slide image files
AI-based pathology predicts origins for cancers of unknown primary - Nature
Partial-Aligner is a napari plugin used for manual registration and histology slide repair
Partial-Aligner is a napari plugin used for manual registration and histology slide repair
This repository contains the codes for reproducing the results obtained by out DeepHistoPathology model for Ivasive Ductal Carcinoma open Dataset cancer detection
A Matlab program for calculating the mean relative error (MRE) under different numbers of view-fields (fieldN) and areas of view-field (fieldS).
NIST OpenSeadragon filtering demo applied to a histology image
Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
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