Pipeline for performing routine genome assembly
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Updated
May 16, 2024 - Nextflow
Pipeline for performing routine genome assembly
Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
Scripts for Hill et al. (in review) 🌾
Read Assembly and Annotation Pipeline Tool
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
The genome of the contractile demosponge Tethya wilhelma
from protein alignments to deep learning preparatory.
a ruby gem for protein alignments. index the protein alignments, extract the regions of interest, extract the locus, extract the alignments
Pipeline for the identification of (coding) gene structures in draft genomes.
Eukaryotic Genome Annotation Pipeline
Scripts and pipeine for Genome_assembly_annotation
De novo genome assembly of subset of the durian fruit genome.
Earl Grey: A fully automated TE curation and annotation pipeline
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
High-precision TE Annotator
pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
genome annotation analyzer for the microbiome analysis
a miniprot alignments analyzer for protein alignments to draft genomes.
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